"Too many .nii.gz files in each subject's directory" error while reading in participants

Submitted by Lisa_Kr on
Forums
DPABI/DPABISurf/DPARSF

Hello,

I am new to DPARSFA and I hope you can help me. I got the following error after specifying my working directory and starting directory (FunImg): "Too many .nii.gz files in each subject's directory, should only keep one 4D .nii.gz file". However, it is only a test run with one subject, so I have one .nii file for this subject in FunImg folder and one .nii.gz file for this subject in the T1Img folder (so one file in each folder in total). What can cause the problem?

 

Thanks a lot!

 

Lisa

Error report in DPABI-Image Calculator-“i1.*g1”

Submitted by Lei.Gao on
Forums
DPABI/DPABISurf/DPARSF

Dear Prof. Dr. Yan,

I'd be grateful if you could take time to help me. When I mask a group of images (*.nii format) with a binary individual mask (*.nii format) in DPABI → Utilities → Image Calculator (both DPABI_V2.0_151201 and DPABI_V1.3_150710 version), the following error is displayed:

error in DPARSF,thank you

Submitted by Gaizhi Li on
Dr. Yan: Hi, I used DPARSF, the 1st step epi dicom to nii and remove the first 10 time points, it showed as follows, and in the FunRaw, there are 240 dcm of every sub, in the FunImg, there is only one nii of every subject.Then I did the 1st step only by epi to nii, there is only one nii in every subject. No error, but I did the 2nd step by remove the first 10 time points. it showed error. I do not know what to do. Thank you so much. ???

DPABI V2.0 and DPARSF V4.0 are released

Submitted by YAN Chao-Gan on
Forums
DPABI/DPABISurf/DPARSF
Dear all,
 
We are pleased to announce the release of DPABI V2.0 and DPARSF V4.0.
 
New features of DPABI_V2.0_151201 and DPARSF_V4.0_151201:
1. Compatible with MATLAB 2014b and later versions.
2. Process the data both with and without global signal regression (GSR). Check “Nuisance regressors setting” -> “Both with & without GSR”. Alternatively, you can call DPARSFA_RerunWithGSR.m. E.g., DPARSFA_RerunWithGSR(DPARSFACfg.mat); where DPARSFACfg.mat stores the previous parameters without GSR.
3.

Gretna warning

Submitted by wisepig119 on
Forums
GRETNA/BrainNet Viewer
Warning: Function assert has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict. 
 
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
 
executing gpml startup script...
Warning: 'I:\SAD\graph\GretnaLogs\Preprocess_logs\tmp' is a directory.  Use rmdir to delete directories. 
> In psom_pipeline_process at 274 
 

rat fMRI, realign

Submitted by YukiSakai on
Forums
DPABI/DPABISurf/DPARSF

Dear DPARSFA experts,

 Thank you very much for the powerful tool. I think this toolbox could be applied to rat fMRI data and I have several questions.

 *If we realign rat fMRI data (X10 space), the output rp~.txt can be simply interpreted as in unit 'mm' and 'degree' in X10 space? Or do we have to change original spm realign function to get the absolute value of motion paramters?

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