How can I extract grey matter voxel signal?

Submitted by Eunji Jun on

Hi, I have 2 questions.

First, How can I extract only grey matter voxel signal?

I extracted 116 ROI region signal applied by AAL mask, but I need voxel-wise information.

I knew that functional information comes from grey matter, so I'm gonna extract all voxel signals in grey matter.

 

Second, I don't know how I can start the point where I have done processing so that I shouldn't do again what I had done.

I tried to uncheck the menu which I have done, but I don't know how I can write 'starting working directory'.

Clusters

Submitted by Ali on

Dear Dr YAN

please i want to read about clusters,i need to know every thing about(cluter size ,peak in cluster and custer report)

and i have question if i save all cluter does the cluter report return all activated regions for all slices?

thanks for your help.

Error at the Automask Step

Submitted by bmalivoire on

Hi! I am getting the following error at the automask step and I am wondering how to proceed?

 

Reading images from "____" etc.

Fixed Clip level = 1507.574839

Used gradual clip level = 1325.819201 ... 1628.431869

Number voxel above clip level = 27351;

Clustering voxels...

??? Undefined function or method 'bwlabeln' for input arguments of type 'double'.

 

Error in ==> w_Automask>w_mask_clust at 306

[L , num]=bwlabeln(mask , RMM);

 

Error in ==> w_Automask at 58

mask = w_mask_clust(mask);