Segmentation failure for T1 coregistered to tilted fMRI

Submitted by cody on
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Hello some structural scans failed segmentation and normalization after coregistering to RS fMRI scans that had been tilted forward (30 degrees on the x axis to avoid inferior-frontal dropout).  We used the unified segmentation method.  It seems SPM may not be able to match the structural to the standardized tissue templates if the orientation differs a lot.  We were able to resolve the problem somewhat by reorienting the images.  Has anyone else experienced this? 

ALFF图像结果

Submitted by confirm on
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老师,您好!
最近搜集了10个被试的静息态数据,按照操作方法使用Basic DPARSF处理数据得到ALFF和fALFF数据,然后用rest viewer查看这组数据并做单样本t检验(alpha sim矫正p0.01),发现有两个问题,谢谢老师予以指导。
1)ALFF的图像(后附图),显示结果有点怪怪的,图中可见一大片的激活改变,而且正激活许多分布在脑池里请教老师为什么出现这个结果?是数据采集的问题还是其他原因造成的?这组数据还能用么?

Brodmann atlas - saving only one area of interest using rest-viewer?

Submitted by kvoigt on
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 Hi,
is it possible to create a template of only one of the brodmann area using rest-viewer and the brodmann atlas provided by rest?
I tried it already, but when i select "save current cluster" it always ends up with saving areas.
thanks very much in advance!

mask出错了,能怎么改正么

Submitted by chunhuichen on
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各位老师们好!

最近处理的一批数据,其中有些被试是头部上下颠倒的,于是用fsl翻转过来并在fslview里看着正常后,后用DEPARSFA处理。结果是,那些头部曾经颠倒了的被试result都为空,而其他没有颠倒的被试都挺正常的,看PicturesForChkNormalization也是那些颠倒的被试normalize没配齐。

我的处理步骤是,slice timing, realign, coregister, Newsegment+DARTEL, Nuisance covaraite regression (poly trend 1, Fiston 24, Global signal, WM signal, CSF signal), Warp Masks into individual space, ALFF/ReHo等,normalize, smooth。 本来想贴图上来的,可能是网速慢贴不上,只好这么简单描述了。

然后我就逐个文件去检查,发现到FunImgARCF看着都正常,头部颠倒的和没有颠倒的被试都差不多,T1ImgNewSegment 灰白质分割也是正常的,但Masks 和Results里都是空的。

有关使用rest计算degree centrality结果输出的问题

Submitted by yangshuo on
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严老师您好,我做了30个正常儿童中心度,在rest计算DC的界面有两个输出结果分别是output directory for weighted sum和output directory for binarize sum(如下图),请问我要用这两个输出文件分别是什么意思,我要下一步进行统计计算用哪个文件夹。
下面是我分别用binarize和weighted进行单样本T检验的结果,感觉稍微有些不一样,请严老师指导,谢谢。

error using dparsf

Submitted by gopsahu on
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Hello
I used Dparsf for resting state fmri images, everything was done according to the manaul, but i receive this error again and again, how can i solve it


??? Error using ==> parallel_function at 598
Error in ==> DPARSFA_run>(parfor body) at 198
Index exceeds matrix dimensions.

Error in ==> DPARSFA_run at 194