Re: [RFMRI] Issue about Automask_additional question

Submitted by phil1022 on

YAN Chao-Gan

Mon, 04/13/2015 - 18:19

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Hi Xiao-Song,

Attachments can not be processed via emails, please paste your figure through the website. 

For some data, automask may fail. If that's the case for your data, I will suggest you skip this step.

Best,

Chao-Gan

 

Dear Chao-Gan,

    Sorry for the inconvienience. Here is the image. It does not look normal though. The issue is, I got this kind of automask for every of my subjects, without any exception. 

 

    Is it normal afterall?

    Thank you very much!

    Sincerely,

    Xiao-Song

Dear Chao-Gan,

    Thanks for the remindering. I will skip it. Will it cause any draw back that I should be caucious with?

    With kind regards.

    Xiao-Song

Just you can not generate a group mask. You can use BrainMask_05 instead.
Best,

Chao-Gan


On Tue, Apr 14, 2015 at 12:08 PM, The R-fMRI Network <rfmri.org@gmail.com> wrote:
[To post a comment, please reply to rfmri.org@gmail.com ABOVE this line]

Commented by Xiaosong He (phil1022)

Dear Chao-Gan,

    Thanks for the remindering. I will skip it. Will it cause any draw back that I should be caucious with?

    With kind regards.

    Xiao-Song


Online version of this post: http://rfmri.org/comment/3653#comment-3653


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Mail comment ID: http://rfmri.org/mailcomment/redirect/%3C31.2000.3653.1429027722.677e5c6c29ea340336aa6c2a4fa8c5cc%40www.rfmri.org%3E

Dear Chao-Gan, Just a real quick question. I ran the Automask in 100 subjects during which no error message had shown. However, all the auto masks I got are white boxes, like this: [image: Inline image 1] Is it normal or not? I am totally confused. Thank you very much! Sincerely, Xiao-Song On Wed, Apr 1, 2015 at 11:59 AM, The R-fMRI Network wrote: > [To post a comment, please reply to rfmri.org@gmail.com ABOVE this > line] > > Commented by YAN Chao-Gan (YAN Chao-Gan) > > Hi, > > Automask sometimes fail on particular subjects. Have many subjects you > have automask process failed? If you can not discard that subject, I will > suggest, 1) try use automask in AFNI; 2) skip automask for that particular > subject. > > Best, > > Chao-Gan > > Online version of this post: > http://www.rfmri.org/comment/3617#comment-3617 > > > Many a little makes a mickle -- your kind contributions shall make our > efforts not perish from the earth. Please help The R-fMRI Network at > http://rfmri.org/#overlay=HelpUs > To manage subscriptions, please visit: > http://rnet.co/mailman/listinfo/rfmri.org_rnet.co > Mail comment ID: > http://www.rfmri.org/mailcomment/redirect/%3C31.1993.3617.1427903961.be1b26a76f4a098532548c7369c98c55%40www.rfmri.org%3E >