DPABI/DPABISurf/DPARSF

Freesurfer atlas normalized to MNI

Submitted by manuelavillanueva on

Hello everyone,

I'm currently in search of the FreeSurfer atlas that has been normalized to the MNI (Montreal Neurological Institute) space. I'm working on a neuroimaging project on DPARSF and need to use this specific atlas for my analyses in the ROI step.

If any of you have access to this atlas or know where I can find it, I would greatly appreciate it. Any help or advice is welcome.

Thank you in advance!

How to interpret the results of Head Motion

Submitted by manuelavillanueva on

Hi.

Once DPARSF is done, I see in my results that the amount of mm of head motion between ExcludeSubjectsAccordingToMaxHeadMotion and HeadMotion.tsv (mean FD_Jenkinson column) is very different.


Could you explain to me the difference between them? Which ones would you recommend to rule out subjects?
 

Thank you so much

Error in DPABI_viewer when applying mask

Submitted by QiaoD on

各位老师好

我在用DPABI进行ANCOVA分析的同时做了permutation test with TFCE,在Viewer中显示结果图(F_vox_fstat.nii)时,选择“Apply a mask for additionaly thresholding”时报错:无法识别的字段名称“AMaskFile”,具体如下:

Error Information

 

之后overlay更换了未做置换检验的F.nii结果图,选择GRF校正时,在Mask File中选择了GreyMask_02_61*73*61.img,运行之后再次报错:无法识别的字段名称 "AMask",具体如下:

 

Error in DPABISurf when running fMRIPrep

Submitted by Juergen Haenggi on

Dear DPABISurf experts

I try to preprocess rsfMRI data with DPABISurf (DPABI_V7.0_230110) together with the latest docker image and faced the following error with fmriprep:
-------------------------------------------------------------------------------------
You are using fMRIPrep-22.1.1, and a newer version of fMRIPrep is available: 23.0.2.
Please check out our documentation about how and when to upgrade:
https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
--topup-max-vols input is no longer used and the flag will be removed in a future release.

Normaliztion check pictures

Submitted by Ido Ji on

Hi!

I am trying to conduct preprocessing of resting-state fMRI.

Among those steps, I can get "pictures for check normalization"

However, no matter how I reorient images, I couldn't get images that I think ideal.

 

This link shows images that I reoriented and the attained results after normalization.

https://ibb.co/Bz8VFM8

 

However, what I think to be ideal is this picture.

https://ibb.co/3rdgmbZ

 

How can I get it to be ideal images?

 

Thanks!