CCS: Connectome Computation System Xi-Nian Zuo
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Connectome Computation System (CCS) extends the functions of FCP scripts onto the cortical surface by integrating FreeSurfer commands and aims to provide a computational platform for multimodal neuroimaging brain connectomics. It contains several unique modules such as quality control procedure (QCP), brain connectome visualization (BCV), test-retest reliability (TRT), multimodal brain parcellation (MBP), and connectome-wide association (CWA).

Problem with normalization

Submitted by Stephanie on

Hi,

I am using the DPARSF 2.2 version using DARTEL for normalization. Unfortunatly after normalization my functional images (for almost all subjects) show random spots (a couple of voxels) with extremly reduced intensity values. This can be seen as black spots when checking "PicturesForChkNormalization". Prior to normalization, these spots are not visible.

I attached a pdf file showing my DPARSF setting and a couple of images from different subjects. 

Thanks in advance for your help.

Regards,

Stephanie