严老师:
您好!我用dpabi做了一批数据,共有18个subject,其中前9个在bet这一步都可以过去,但后9个在这一步就会报错(后9个subject每一个我都单独做了一下这一步),matlab报错信息如下:
Bet begin...
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini
Adjusting NIfTI/Analyze image D:\pain_l\RealignParameter\sub_047\Bet_meanaWANG_LANZHI_20130925_433203476_1301_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr
Changing subformat of D:\pain_l\RealignParameter\sub_047\Bet_meanaWANG_LANZHI_20130925_433203476_1301_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr
Image data-type is SHORTS
Image min/max is -37 1648
bas = -37, range = 1685
Image voxel size: 1.796875 1.796875 2.999954
Image dimensions: 128 128 50
hist_min=0.000000 thresh2=4.000000 thresh=15.000000 thresh98=114.000000 hist_max=248.000000
CofG (114.124335,128.267836,69.714360) mm
RADIUS 69.518621
MEDIANVAL 82.000000
Pass 1, iteration 0
Pass 1, iteration 50
Pass 1, iteration 100
Pass 1, iteration 150
Pass 1, iteration 200
Pass 1, iteration 250
Pass 1, iteration 300
Pass 1, iteration 350
Pass 1, iteration 400
Pass 1, iteration 450
Pass 1, iteration 500
Pass 1, iteration 550
Pass 1, iteration 600
Pass 1, iteration 650
Pass 1, iteration 700
Pass 1, iteration 750
Pass 1, iteration 800
Pass 1, iteration 850
Pass 1, iteration 900
Pass 1, iteration 950
self-intersection total = 48.342182 (threshold=4000.000000)
1.474293 secs
0.032178 for pre-processing
0.245222 for normal computation
0.958141 for search along normal
0.094163 for checking self-intersection
0.036788 for output
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini
Adjusting NIfTI/Analyze image D:\pain_l\RealignParameter\sub_045\Bet_meanaMA_ZHENGQIONG_20130902_431220457_601_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr
Changing subformat of D:\pain_l\RealignParameter\sub_045\Bet_meanaMA_ZHENGQIONG_20130902_431220457_601_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr
Image data-type is SHORTS
Image min/max is -13 1804
bas = -13, range = 1817
Image voxel size: 1.796875 1.796875 2.999886
Image dimensions: 128 128 50
hist_min=0.000000 thresh2=0.000000 thresh=10.000000 thresh98=100.000000 hist_max=247.000000
CofG (114.118970,122.825888,71.238115) mm
RADIUS 70.173773
MEDIANVAL 68.000000
Pass 1, iteration 0
Pass 1, iteration 50
Pass 1, iteration 100
Pass 1, iteration 150
Pass 1, iteration 200
Pass 1, iteration 250
Pass 1, iteration 300
Pass 1, iteration 350
Pass 1, iteration 400
Pass 1, iteration 450
Pass 1, iteration 500
Pass 1, iteration 550
Pass 1, iteration 600
Pass 1, iteration 650
Pass 1, iteration 700
Pass 1, iteration 750
Pass 1, iteration 800
Pass 1, iteration 850
Pass 1, iteration 900
Pass 1, iteration 950
self-intersection total = 72.222524 (threshold=4000.000000)
1.436402 secs
0.033253 for pre-processing
0.240249 for normal computation
0.946821 for search along normal
0.093965 for checking self-intersection
0.016359 for output
Chris Rorden's dcm2nii :: 1 April 2010
reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini
Adjusting NIfTI/Analyze image D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.hdr
Changing subformat of D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.hdr
Not enough data in D:\pain_l\T1ImgBet\sub_047\fBet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.img
Actually read 0
??? Error using ==> y_Read at 54
File doesn't exist: D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refAfterBet.img
Error in ==> y_Call_bet at 46
Data = y_Read(fullfile(OutPath,[OutFile,'AfterBet.img']));
Error in ==> DPARSFA_run>(parfor body) at 1399
y_Call_bet(T1File, OutputFile_Temp, '');
Error in ==> parallel_function at 469
F(base, limit);
Error in ==> DPARSFA_run at 1371
parfor i=1:AutoDataProcessParameter.SubjectNum
Error in ==> DPARSFA>pushbuttonRun_Callback at 1663
[Error]=DPARSFA_run(handles.Cfg);
Error in ==> gui_mainfcn at 96
feval(varargin{:});
Error in ==> DPARSFA at 30
gui_mainfcn(gui_State, varargin{:});
??? Error while evaluating uicontrol Callback
请问怎么解决?
谢谢!
Hi,
Hi,
I think bet (compiled by Dr. Chris Rorden) can not process those subjects.
Probably you can use Linux or Mac OS and the latest FSL to have a try.
Best,
Chao-Gan
严老师:
严老师:
您好!但是我所有的数据采集和bet前的预处理都完全一样,为什么会有的可以做,有的不可以做?另外,如果不做bet这一步,所有的数据都可以往下做的,如果我不做这一步,对结果的影响大吗?
谢谢您及时的回复!
Bet will help for
Bet will help for coregistration. But if the coregistration is good enough, you can skip it!
Please speak up if you would like me to switch to Chinese.
Best,
Chao-Gan
我就是发现用老版本的DPARSF做出的结果不是很好
我就是发现用老版本的DPARSF做出的结果不是很好,所以想用DPARSF3.0做一下看看结果。我先用其它方法做bet这一步,然后将T1Img的前缀改为Bet,然后再做coregistration,这样行吗?
谢谢!
Yes.
Yes.
And you can even UNCHECK "bet".
Best,
Chao-Gan
谢谢您及时的回复!
谢谢您及时的回复!