关于dpabi中bet步骤

Submitted by lizf111 on

严老师:

您好!我用dpabi做了一批数据,共有18个subject,其中前9个在bet这一步都可以过去,但后9个在这一步就会报错(后9个subject每一个我都单独做了一下这一步),matlab报错信息如下:

Bet begin...

Chris Rorden's dcm2nii :: 1 April 2010

reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini

Adjusting NIfTI/Analyze image D:\pain_l\RealignParameter\sub_047\Bet_meanaWANG_LANZHI_20130925_433203476_1301_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr

Changing subformat of D:\pain_l\RealignParameter\sub_047\Bet_meanaWANG_LANZHI_20130925_433203476_1301_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr

Image data-type is SHORTS

Image min/max is -37 1648

bas = -37, range = 1685

Image voxel size: 1.796875 1.796875 2.999954

Image dimensions: 128 128 50

hist_min=0.000000 thresh2=4.000000 thresh=15.000000 thresh98=114.000000 hist_max=248.000000

CofG (114.124335,128.267836,69.714360) mm

RADIUS 69.518621

MEDIANVAL 82.000000

Pass 1, iteration 0

Pass 1, iteration 50

Pass 1, iteration 100

Pass 1, iteration 150

Pass 1, iteration 200

Pass 1, iteration 250

Pass 1, iteration 300

Pass 1, iteration 350

Pass 1, iteration 400

Pass 1, iteration 450

Pass 1, iteration 500

Pass 1, iteration 550

Pass 1, iteration 600

Pass 1, iteration 650

Pass 1, iteration 700

Pass 1, iteration 750

Pass 1, iteration 800

Pass 1, iteration 850

Pass 1, iteration 900

Pass 1, iteration 950

self-intersection total = 48.342182 (threshold=4000.000000)

1.474293 secs

 

0.032178 for pre-processing

0.245222 for normal computation

0.958141 for search along normal

0.094163 for checking self-intersection

0.036788 for output

Chris Rorden's dcm2nii :: 1 April 2010

reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini

Adjusting NIfTI/Analyze image D:\pain_l\RealignParameter\sub_045\Bet_meanaMA_ZHENGQIONG_20130902_431220457_601_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr

Changing subformat of D:\pain_l\RealignParameter\sub_045\Bet_meanaMA_ZHENGQIONG_20130902_431220457_601_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr

Image data-type is SHORTS

Image min/max is -13 1804

bas = -13, range = 1817

Image voxel size: 1.796875 1.796875 2.999886

Image dimensions: 128 128 50

hist_min=0.000000 thresh2=0.000000 thresh=10.000000 thresh98=100.000000 hist_max=247.000000

CofG (114.118970,122.825888,71.238115) mm

RADIUS 70.173773

MEDIANVAL 68.000000

Pass 1, iteration 0

Pass 1, iteration 50

Pass 1, iteration 100

Pass 1, iteration 150

Pass 1, iteration 200

Pass 1, iteration 250

Pass 1, iteration 300

Pass 1, iteration 350

Pass 1, iteration 400

Pass 1, iteration 450

Pass 1, iteration 500

Pass 1, iteration 550

Pass 1, iteration 600

Pass 1, iteration 650

Pass 1, iteration 700

Pass 1, iteration 750

Pass 1, iteration 800

Pass 1, iteration 850

Pass 1, iteration 900

Pass 1, iteration 950

self-intersection total = 72.222524 (threshold=4000.000000)

1.436402 secs

 

0.033253 for pre-processing

0.240249 for normal computation

0.946821 for search along normal

0.093965 for checking self-intersection

0.016359 for output

Chris Rorden's dcm2nii :: 1 April 2010

reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini

Adjusting NIfTI/Analyze image D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.hdr

Changing subformat of D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.hdr

Not enough data in D:\pain_l\T1ImgBet\sub_047\fBet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.img

Actually read 0

??? Error using ==> y_Read at 54

File doesn't exist: D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refAfterBet.img

 

Error in ==> y_Call_bet at 46

    Data = y_Read(fullfile(OutPath,[OutFile,'AfterBet.img']));

 

Error in ==> DPARSFA_run>(parfor body) at 1399

        y_Call_bet(T1File, OutputFile_Temp, '');

 

Error in ==> parallel_function at 469

            F(base, limit);

 

Error in ==> DPARSFA_run at 1371

    parfor i=1:AutoDataProcessParameter.SubjectNum

 

Error in ==> DPARSFA>pushbuttonRun_Callback at 1663

    [Error]=DPARSFA_run(handles.Cfg);

 

Error in ==> gui_mainfcn at 96

        feval(varargin{:});

 

Error in ==> DPARSFA at 30

    gui_mainfcn(gui_State, varargin{:});

 

??? Error while evaluating uicontrol Callback

请问怎么解决?

谢谢!

YAN Chao-Gan

Tue, 09/09/2014 - 14:37

Hi,

I think bet (compiled by Dr. Chris Rorden) can not process those subjects.

Probably you can use Linux or Mac OS and the latest FSL to have a try.

Best,

Chao-Gan

lizf111

Tue, 09/09/2014 - 14:54

In reply to by YAN Chao-Gan

严老师:

您好!但是我所有的数据采集和bet前的预处理都完全一样,为什么会有的可以做,有的不可以做?另外,如果不做bet这一步,所有的数据都可以往下做的,如果我不做这一步,对结果的影响大吗?

谢谢您及时的回复!

Bet will help for coregistration. But if the coregistration is good enough, you can skip it!

Please speak up if you would like me to switch to Chinese.

Best,

Chao-Gan