ABIDE1 preprocessing using DPARSF

Submitted by smaleki on

 


Dear  Dr. Chao-Gan Yan

I am trying to follow the specified steps in PCP in order to preprocess ABIDE1 using DPARSF. I have attached an screenshot of the best configuration that I think is true ,however my result does not completely match with released preprocessed data. I also spent some time to find the correct configuration in the web but I couldn’t. I appreciate if you could help me to find the exact DPARSF configuration as you did in PCP project. 

Thanks

S Maleki

 

 

YAN Chao-Gan

Fri, 05/04/2018 - 09:27

Please see here: http://preprocessed-connectomes-project.org/abide/dparsf.html

This one is more depend on the template of "Preprocessing in original space".

 

You can also download ABIDE metrics from here: http://mrirc.psych.ac.cn/DownloadRfMRIMaps

This one is used the V4 template (default parameter).

However, as manually reorient might be slightly difference, results may differ slightly.

Hello sir,

The link you provided for downloading ABIDE metrics is showing access denied. I would be highly grateful if you can provide the correct parameters as they have been used in the ABIDE Dparsf pipeline. I am using the below parameters as shown in the screenshot but still the correlation matrix is not matching completely with ABIDE preprocessed data.

 

 

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