Issues with DPARSFA

Submitted by farras on

YAN Chao-Gan

Wed, 04/09/2014 - 23:07

Hi Farras,

That's a "warning" but not an "error". If it crashed, could you paste the error message (in red color) here?

Best,

Chao-Gan

Dear DPARSF experts, I have successfully used DPARSFA in the past and found it to be very useful. I've encountered problems running a preprocessing job on 57 subjects. I grouped the T1 *.dcm subjects in T1Raw and the fMRI *.dcm subjects in FunRaw. I obtained folders FunImg and T1Img before the program crashed with the following messages: Slice Timing Setup:NC019 OKSlice Timing Setup:NC024 OKSlice Timing Setup:NC028 OKSlice Timing Setup:NC031 OKSlice Timing Setup:NC032 OKSlice Timing Setup:NC034 OKSlice Timing Setup:NC036 OKSlice Timing Setup:NC039 OKSlice Timing Setup:NC040 OKSlice Timing Setup:NC041 OKSlice Timing Setup:NC060 OKSlice Timing Setup:NC062 OKSlice Timing Setup:NC070 OKSlice Timing Setup:NC073 OKSlice Timing Setup:NC074 OKSlice Timing Setup:NC077 OKSlice Timing Setup:NC086 OKSlice Timing Setup:NC103 OKSlice Timing Setup:NC109 OKSlice Timing Setup:NC118 OKSlice Timing Setup:NC119 OKSlice Timing Setup:NC121 OKSlice Timing Setup:NC122 OKSlice Timing Setup:NC123 OKSlice Timing Setup:NC124 OKSlice Timing Setup:NC128 OKSlice Timing Setup:NC149 OKSlice Timing Setup:NC170 OKSlice Timing Setup:NY069 OKSlice Timing Setup:NY242 OKSlice Timing Setup:NY244 OKSlice Timing Setup:NY255 OKSlice Timing Setup:NY256 OKSlice Timing Setup:NY258 OKSlice Timing Setup:NY262 OKSlice Timing Setup:NY266 OKSlice Timing Setup:NY273 OKSlice Timing Setup:NY276 OKSlice Timing Setup:NY297 OKSlice Timing Setup:NY298 OKSlice Timing Setup:NY299 OKSlice Timing Setup:NY311 OKSlice Timing Setup:NY312 OKSlice Timing Setup:NY313 OKSlice Timing Setup:NY317 OKSlice Timing Setup:NY326 OKSlice Timing Setup:NY338 OKSlice Timing Setup:NY339 OKSlice Timing Setup:NY342 OKSlice Timing Setup:NY343 OKSlice Timing Setup:NY347 OKSlice Timing Setup:NY349 OKSlice Timing Setup:NY360 OKSlice Timing Setup:NY362 OKSlice Timing Setup:NY363 OKSlice Timing Setup:NY368 OKSlice Timing Setup:NY371 OKSlice Timing Setup:NY382 OK Warning: Run spm_jobman('initcfg'); beforehand > In spm_jobman at 107 In DPARSFA_run at 393 ------------------------------------------------------------------------ Running job #1 ------------------------------------------------------------------------ Running 'Slice Timing' SPM8: spm_slice_timing (v3756) 17:35:27 - 09/04/2014 ======================================================================== Your TR is 2.4 Failed 'Slice Timing' Improper assignment with rectangular empty matrix. In file "/home/faa2016/Documents/MATLAB/myToolboxes/spm8/spm_slice_timing.m" (v3756), function "spm_slice_timing" at line 232. In file "/home/faa2016/Documents/MATLAB/myToolboxes/spm8/config/spm_run_st.m" (v2312), function "spm_run_st" at line 25. The following modules did not run: Failed: Slice Timing Error using cfg_util (line 835) Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines (look for the line showing the exact #job as displayed in this error message) ------------------ Running job #1 ------------------ Error in spm_jobman (line 217) Error in DPARSFA_run (line 394) Any help will be most appreciated. -- Farras Abdelnour farras.abdelnour@gmail.com http://sacklerinstitute.academia.edu/FarrasAbdelnour