Re: [RFMRI] Error using y_FD_Jenkinson

Submitted by Anonymous (not verified) on

YAN Chao-Gan

Fri, 10/18/2013 - 00:50

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Hi Michael,
Sometimes overwriting may mess files up.

Usually my strategy is: if I want to re-analyze with some steps, I will delete the files after these steps.

And this happens more in my case: delete all the files except for FunRaw and T1Raw, and re-do all the analysis, thus I will not worry about overwriting, or messing up any more. (Sometimes I will reserve "ReorientMats" and rename it as "DownloadedReorientMats", thus I don't need to re-do the "interactive reorienting").

Best,

Chao-Gan


On Thu, Oct 17, 2013 at 8:10 PM, The R-fMRI Network <rfmri.org@gmail.com> wrote:
[To post a comment, please reply to rfmri.org@gmail.com ABOVE this line]

By Michael Dimyan (mdimyan)

Ah...you raise an interesting issue -- tell me if this is the error:

I did run the analysis once before using interactive reorientation. That analysis pipeline stopped due to a different error that I figured out, but then I decided to re-run the analysis without interactive reorientation, but I did it in the same working directory. I assumed that any files created the first time would simply be overwritten and not cause any problems.

Is that a correct assumption, or when I rerun an analysis, should I create a completely new working directory, or delete the DPARSFA created directories?

Thanks

The R-fMRI Network 10/17/13 6:21 PM >>>


Online version of this post: http://www.rfmri.org/content/re-rfmri-error-using-yfdjenkinson


Ah...you raise an interesting issue -- tell me if this is the error: I did run the analysis once before using interactive reorientation. That analysis pipeline stopped due to a different error that I figured out, but then I decided to re-run the analysis without interactive reorientation, but I did it in the same working directory. I assumed that any files created the first time would simply be overwritten and not cause any problems. Is that a correct assumption, or when I rerun an analysis, should I create a completely new working directory, or delete the DPARSFA created directories? Thanks >>> The R-fMRI Network 10/17/13 6:21 PM >>> [To post a comment, please reply to rfmri.org@gmail.com ABOVE this line] Commented by YAN Chao-Gan (YAN Chao-Gan) One more tips, if you want to attach any files, you have to go to the website of rfmri.org. Replying email can only post text. Online version of this post: http://www.rfmri.org/comment/2910#comment-2910 -- Mail comment ID: http://www.rfmri.org/mailcomment/redirect/%3C31.1692.2910.1382048434.b7b28e36176c43a4bd3dc5217558de2c%40www.rfmri.org%3E This e-mail and any accompanying attachments may be privileged, confidential, contain protected health information about an identified patient or be otherwise protected from disclosure. State and federal law protect the confidentiality of this information. If the reader of this message is not the intended recipient; you are prohibited from using, disclosing, reproducing or distributing this information; you should immediately notify the sender by telephone or e-mail and delete this e-mail.