Hi there,
I preprocessed (detrended) my data outside of the toolbox but want to use DPARSF to smooth and calculate ALFF, fALFF, etc. I created folders in FunRaw, put my data in the FunImgNormalized folder (even though they are not normalized, this is the only way I tried that actually made the data show up under Subjetcts), and tried to run just these steps that I wanted. I checked smooth, use with smooth, no mask, checked everything on the ALFF line, regress out CSF. I get the following error:
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Smooth'
Done 'Smooth'
Done
Moving Smoothed Files:gad_c029 OKMoving Smoothed Files:gad_c031 OK
Computing ALFF with: "/Volumes/EtkinLab_Data/Imaging/ctr_gad_mdd_cmd_pts/resting_state/D.Oathes/Temp/FunRaw/FunImgNormalizedSmoothedDetrendedFiltered/gad_c029"
Read 3D EPI functional images: "/Volumes/EtkinLab_Data/Imaging/ctr_gad_mdd_cmd_pts/resting_state/D.Oathes/Temp/FunRaw/FunImgNormalizedSmoothedDetrendedFiltered/gad_c029".Index exceeds matrix dimensions.
Error in rest_to4d (line 50)
rest_waitbar(0.001, ...
Error in alff (line 34)
[AllVolume,vsize,theImgFileList, Header,nVolumn] =rest_to4d(ADataDir);
Error in DPARSF_run (line 1100)
alff(
[AutoDataProcessParameter.DataProcessDir,filesep,FunImgDir,filesep,AutoDataProcessParameter.SubjectID{i}],
...
Error in DPARSF>pushbuttonRun_Callback (line 976)
[Error]=DPARSF_run(handles.Cfg);
Error in gui_mainfcn (line 96)
feval(varargin{:});
Error in DPARSF (line 43)
gui_mainfcn(gui_State, varargin{:});
Error while evaluating uicontrol Callback
===================================
Is there a different folder I should put the images into if I want to calculate ALFF, fALFF, etc. in native space? Alternatively, is there some other issue that I can fix to make this run?
Thanks much,
Desmond
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Re: rePost DPARSF error