DPABI/DPABISurf/DPARSF

Implementing FielMap correction with magnitude and phase files already converted to .nii

Submitted by JulianG on

 

Dear Forum,

I preprocess fMRI data which has been converted to .nii format. I wonder how I could use FieldMap correction when the magnitude and phase1 phase2 images are in .nii. The toolbox seems to read only dcm files for this particular step. I unsuccesfully tried out the following data structure:  

How do I use the DPABI_VIEW interface surface view with BrainNet Viewer

Submitted by yangfan on

Dear teacher, I want to use brainnet viewer under DPABI_VIEW interface to display the results, but the following error occurs during the opening process. How can I solve it?

Subscript indices must either be real positive integers or logicals.

BET went wrong for T1.nii that was flipped from left to right using Python-nibabel.

Submitted by Lena_Wang on
Predefined Types

Here is the problem. I need to flip some T1.nii data from left to right, making all lesion located in the left hemisphere. By using nibabel package by Python laguage, I got some flipped data.

However, when I running the BET function on those data within DPARSFA, it suggested : Not enough data in D:\Lena\000test\T1ImgBet\Sub_003\fBet_003BeforeBet.img.

如何把4Dfmri转换成2维,一维是时间,一维是体素个数呢?

Submitted by zhangzhuan on

严老师您好:

        请问如何把4Dfmri转换成2维,一维是时间,一维是体素个数。我想把这个数据拿去做字典学习,更好的提取ROI。但是不知道怎么去转换这个。

Error_DPARSFA_DPABI

Submitted by James on

Hi, 

I am trying to preprocess .nii files and extract ROI time course using AAL. However, I kept recieving this error message (top and bottom), can you kindly advise:

 

Warning: File: DPARSFA_run.m Line: 766 Column: 66

The temporary variable SliceOrder will be cleared at the beginning of each iteration of the parfor loop.

Any value assigned to it before the loop will be lost.  If SliceOrder is used before it is assigned in the parfor loop, a runtime

error will occur.