DPABI/DPABISurf/DPARSF

Hi, Dr. Yan, 

While I used the DPABI_Utilities to extract values from the preprocessed images (gifti/nifti), an error as following occured. I tried to debug including: 1) change the version of dpabi; 2)  runs on other computers; 3) change the other atlas; 4) re-set matlab path, however, the error still occured.

For nifti data:

Hi, Dr. Yan, 

In these 2 days I've encountered several problems using DPARSF 5.2, expecially with the Preprocessing for Task fMRI data, and I'd like to ask you some suggestions to fix the anomalies. In particular, the error starts when I try to open the window to set up the preprocessing, it crashes immediately, showing in the command window these errors:

"Operands to the logical and (&&) and or (||) operators must be convertible to logical scalar values.

Hi, Dr. Yan,

When I run the subjects in DPABISurf, there are two subjects cannot be processed at the fmriprep while others can? Could you please have a look and give me some suggestions on how to deal with it? Attached please find the error info and the file. Thank you for your expended time in advance!

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Dear DPABI team,

I try to create the 90% EPI coverage mask using the respective function in quality control. I preprocessed the data using DPABIsurf pipeline and fMRIprep. 

I keep getting the error message 

Reading images from "/Users/julian/Documents/Research/DPABI_Surf_neworder/Masks/AutoMasks/wAutoMask_Sub_001.nii" etc.

Error using y_Read (line 54)

各位老师好：

最近刚开始接触DPABISurf和Docker，我想请教Linux下一个关于Docker运行结果的所有者的问题。

首先，按照下面的方法，在Linux上让管理员用root账户配置了我的账号：

# 添加 docker 用户组

sudo groupadd docker

# 把需要执行的 docker 用户添加进该组，这里是 ABC

sudo gpasswd -a ABC docker

# 重启 docker

Sir,

While running DPARSFA on the Demo Data that you have provided on your website, an error is coming. The error is:

Dear DPABI team,

first of all I would like to thank you again for your great work which is very helpful. And then I hope I haven't missed an answer already given to my question. If so, I apologize.

各位老师您好：

         我在进行统计分析的多重校正时，选用了GRF。发现系统默认的平滑核的数值和运行了平滑估计的值相差较大，请问是否应该重新估计平滑核呢（前期的数据预处理均是利用DPARSFA进行的，但是由于多中心，然后利用代码进行了ComBat）。主要是利用默认值和估计平滑核之后得到的结果相差很大，故来请教一下老师，这种情况应该怎样选择和处理呢？

严老师您好，我在服务器上运行Dpabisurf时，需要写成Linux脚本任务调用dpabisurf时有几个问题，请严老师提供帮助，

1，代码中的/opt/DPABI/DPABI_StandAlone/run_DPABISurf_run_StandAlone.sh一般存放在什么位置，我在DPABI文件夹中没有找到,

2，${MCRPath}是指matlab中runtime文件夹中MCR路径是吗？

3，/data/DPABISurf_Cfg.mat 这里的data需要替换成My DATA PATH吗？

谢谢严老师！

Dear Dr. Yan, 

DAPBI can get a .josn file from FunRaw data in which the information of slice timing seems to be provided. For example,  the json file have a field: 

I think it indirectly tell us the slice number (=36) and slice order (here is interval ascending).