DPABI/DPABISurf/DPARSF

ReHo questions

Submitted by sharky on

Dear Colleagues,

I.

Would it be possible to implement calculation of a network homogeniety in the context of ReHo..  How would you do that? Would you just calculate KCC [Kendall's coefficient concordance] for all voxels within a given mask? (say, if we use Yeo's parcellation of major brain networks). Could you please suggest a function/script I can look into?

II.

How to make a Grey Matter mask by using REST?

Submitted by gekehe on

Hi:

I want to make a gray matter mask with GM probabilities greater than 20%. I've found there are brainmasks in REST, but I don't know whether they are gray matter masks or whole brain masks and what interpolating thresholds  were used. Would you plese teach me how to make a Grey Matter mask by using REST or dpabi? Thanks a lot!

difference between "ROI_FCMap.txt" and "ROISignals.txt"?

Submitted by Lisa_Kr on

Hello,

I don't quite understand the conceptual difference between these outputs of the Functional Connectivity option. Both have as many rows as there are time points. Is it correct that "ROI_FCMap.txt" is the average correlation between the ROI and the rest of the brain at each time point and "ROISignals.txt" is the average activation of the ROI at every time point? Also are these numbers already z-transformed or not?

 

Thank you so much for your help!

Lisa

DPARSF error after reorientation of images

Submitted by dbd18 on

Dear experts,

I am new to DPARSF A and I would like to use this software to analyse resting state data from a series of subjects.

After having set all the parameters and prepared the data in the required way, I tried to run the software from the gui but I get the following error: