Hi,
Thanks for your response- and I am sorry as I thought I sent it!
(I am using DPARSF 2.2, Rest 1.8, Matlab 2010a, Spm8 updated)
Here its:
The following modules did not run:
Failed: New Segment
??? Error using ==> cfg_util at 835
Job execution failed. The full log of this run can be found in
MATLAB command window, starting with the lines (look for the
line showing the exact #job as displayed in this error
message)
------------------
Running job #2
------------------
Error in ==> spm_jobman at 217
Error in ==> DPARSFA_run>(parfor body) at 1416
Error in ==> parallel_function at 475
Error in ==> DPARSFA_run at 1393
Error in ==> DPARSFA>pushbuttonRun_Callback at 1569
Error in ==> gui_mainfcn at 96
Error in ==> DPARSFA at 33
??? Error while evaluating uicontrol Callback
Hi, did you find a solution to your problem? I have similar error messages occuring. I think it's about the versions you use for matlab, SPM, JAVA, Rest and DPARSF. I use Matlab2009b, SPM8, DPARSF 2.2, Rest 1.8, Java SE 6.
Does anybody have more infomation about the compatability of the versions?
I heard DPARSF_V2.2_121225, REST_V1.8_121225, spm8, java7_17, Matlab R2012a is a good match?!
I did not find any solution for this problem and I am not sure about the compatibility of the DPARSF 2.2 version with other softwares (Matlab, REST and SPM8). As you mentioned it might be compatibility issue as I use MatlabR2010a, SPM8, DPARSF 2.2, Rest 1.8, Java SE 6. It would be good idea if someone shed light on this issue to clarify it. Thanks
DPARSF_V2.2_121225, REST_V1.8_121225, spm8, java7_17, Matlab R2012a is a good match.
Now you can use the newest versions: DPARSF_V2.2_130309, REST_V1.8_130303. They are compatilbe with MATLAB 2008~2012a. 2012b hasn't been fully tested yet, but should not be a problem.
I guess you problem is that you didn't set up SPM8 correctly: please "add with subfolders" for SPM8. For REST and DPARSF, just add folder.
On another macbook with the same set up of versions it's not the java error message, it's:
Reference: Yan C and Zang Y (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Front. Syst. Neurosci. 4:13. doi:10.3389/fnsys.2010.00013;Song, X.W., Dong, Z.Y., Long, X.Y., Li, S.F., Zuo, X.N., Zhu, C.Z., He, Y., Yan, C.G., Zang, Y.F., 2011. REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing. PLoS ONE 6, e25031.
??? No public field IsStartupComplete exists for class distcomp.interactiveclient.
Error in ==> distcomp.interactiveclient.interactiveclient at 11
Re: DPARSF 2.2 error
What's the error?
Re: DPARSF 2.2 error
Hi,
Thanks for your response- and I am sorry as I thought I sent it!
(I am using DPARSF 2.2, Rest 1.8, Matlab 2010a, Spm8 updated)
Here its:
The following modules did not run:
Failed: New Segment
??? Error using ==> cfg_util at 835
Job execution failed. The full log of this run can be found in
MATLAB command window, starting with the lines (look for the
line showing the exact #job as displayed in this error
message)
------------------
Running job #2
------------------
Error in ==> spm_jobman at 217
Error in ==> DPARSFA_run>(parfor body) at 1416
Error in ==> parallel_function at 475
Error in ==> DPARSFA_run at 1393
Error in ==> DPARSFA>pushbuttonRun_Callback at 1569
Error in ==> gui_mainfcn at 96
Error in ==> DPARSFA at 33
??? Error while evaluating uicontrol Callback
Thanks
Turk
Re: DPARSF 2.2 error
Do you have more information? E.g., some lines before these lines?
Possibly is the problem of SPM8 installation.
Best,
Chao-Gan
Re: DPARSF 2.2 error
Does anybody have more infomation about the compatability of the versions?
I heard DPARSF_V2.2_121225, REST_V1.8_121225, spm8, java7_17, Matlab R2012a is a good match?!
Thanks a lot,
Corinna
Re: DPARSF 2.2 error
I did not find any solution for this problem and I am not sure about the compatibility of the DPARSF 2.2 version with other softwares (Matlab, REST and SPM8). As you mentioned it might be compatibility issue as I use MatlabR2010a, SPM8, DPARSF 2.2, Rest 1.8, Java SE 6. It would be good idea if someone shed light on this issue to clarify it. Thanks
Turk
Re: DPARSF 2.2 error
DPARSF_V2.2_121225, REST_V1.8_121225, spm8, java7_17, Matlab R2012a is a good match.
Now you can use the newest versions:
DPARSF_V2.2_130309, REST_V1.8_130303. They are compatilbe with MATLAB 2008~2012a. 2012b hasn't been fully tested yet, but should not be a problem.
I guess you problem is that you didn't set up SPM8 correctly: please "add with subfolders" for SPM8. For REST and DPARSF, just add folder.
Best,
Chao-Gan
Re: DPARSF 2.2 error
Unfortunately, the error messages persist:
Note, that I use Java SE6 and a Mac. When I try again to open DPARSF advanced the following error message occurs:
??? Undefined function or variable 'distcomp.interactiveclient'.
It's possible to open the basic edition of DPARSF, but then after starting the analysis, the following similar error message pops up:
After starting the analysis again:
Help would be much appreciated.
Best, Corinna
Re: DPARSF 2.2 error
The second issue could be the wrong specification of the slice timing parameters. Please check slice number, slice oeder...
Please copy the lines before "The following modules did not run:
Best,
Chao-Gan
Re: DPARSF 2.2 error
Actually, for the java issue, please refer to http://www.restfmri.net/forum/node/1410 to find some information there.
Re: DPARSF 2.2 error
37 slices, interleaved. Settings: Slice Number: 37, Slice Order: [1 3 5 7 9 11 13 15 17 19 21 23 25 27 29 31 33 35 37 2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36], Reference Slice: 37. The setting are right as they worked before...?!
Thanks, Corinna
Re: DPARSF 2.2 error
Please check the subjects. I guess there are several subjects are not acquired with this slice parameter.
Re: DPARSF 2.2 error
Reference: Yan C and Zang Y (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Front. Syst. Neurosci. 4:13. doi:10.3389/fnsys.2010.00013; Song, X.W., Dong, Z.Y., Long, X.Y., Li, S.F., Zuo, X.N., Zhu, C.Z., He, Y., Yan, C.G., Zang, Y.F., 2011. REST: A Toolkit for Resting-State Functional Magnetic Resonance Imaging Data Processing. PLoS ONE 6, e25031.
??? No public field IsStartupComplete exists for class distcomp.interactiveclient.
Error in ==> distcomp.interactiveclient.interactiveclient at 11
obj.IsStartupComplete = false;
Error in ==> distcomp.pGetInteractiveObject at 33
conn = distcomp.interactiveclient;
Error in ==> distcomp.getInteractiveObject at 11
c = distcomp.pGetInteractiveObject('create');
Error in ==> matlabpool at 117
client = distcomp.getInteractiveObject();
Error in ==> DPARSFA>DPARSFA_OpeningFcn at 230
CurrentSize_MatlabPool = matlabpool('size');
Error in ==> gui_mainfcn at 221
feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});
Error in ==> DPARSFA at 33
gui_mainfcn(gui_State, varargin{:});
Error in ==> DPARSF>DPARSF_OpeningFcn at 60
DPARSFA;
Error in ==> gui_mainfcn at 221
feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:});
Error in ==> DPARSF at 47
gui_mainfcn(gui_State, varargin{:});
It would be great you'd have an idea about that.
Cheers, Corinna
Re: DPARSF 2.2 error
The parallel computing toolbox may not work so well in Matlab 2009. I but I don't have such a plotform to test.