Thank you for providing such a useful toolbox for data preprocessing with DPARSF A. It works perfectly now after I reinstalled fsl.
I have preprocessed all my data with DPARSF I would like to use REST to estimate Functional connectivity. I have two resting-state sessions, and my data is currently in two folders (FunImgARCFWS for the first resting state run and S2_FunImgARCFWS for the second resting state run).
How do I set up the data correctly so that Rest can read that each person had two processed resting state runs?
The easiest way is click "Functional Connectivity" and then "Define ROI" in DPARSF, then you will get the functional connectivity maps automatically.
If you want to use REST, you need to do it seperately for FunImgARCFWS and S2_FunImgARCFWS. You need "add all-subfolders recursively" to add all the subjects.
The easiest way is click "Functional Connectivity" and then "Define ROI" in DPARSF, then you will get the functional connectivity maps automatically.
If you want to use REST, you need to do it seperately for FunImgARCFWS and S2_FunImgARCFWS. You need "add all-subfolders recursively" to add all the subjects.
/usr/local/fsl/bin/bet: line 151: /bin/remove_ext: No such file or directory
...
but we think that our FSL installation is good because we usually used bet and we also tried to run bet from the terminal with a T1 image and evrything works in the correct way. Could you please let us know how we can find out what is the problem? We are running DPARSF v.3.1
Dear Expert:
I have 'sourced ' FSL in the terminal like this:
FSLDIR=/Applications/fsl
. ${FSLDIR}/etc/fslconf/fsl.sh
PATH=${FSLDIR}/bin:${PATH}
export FSLDIR PATH
I then inputted the command 'bet' and received below options.
Usage: bet
Hi Cat,
Hi Cat,
"/Applications/fsl/bin/bet: line 150: /bin/remove_ext: No such file or directory"
I suspect there is something wrong with your FSL installation.
You can test it by bet a T1 image in terminal.
If so, you may try to re-install FSL.
Best,
Chao-Gan
Rest how to set up data for two sessions
Dear Dr. Yan,
Thank you for providing such a useful toolbox for data preprocessing with DPARSF A. It works perfectly now after I reinstalled fsl.
I have preprocessed all my data with DPARSF I would like to use REST to estimate Functional connectivity. I have two resting-state sessions, and my data is currently in two folders (FunImgARCFWS for the first resting state run and S2_FunImgARCFWS for the second resting state run).
How do I set up the data correctly so that Rest can read that each person had two processed resting state runs?
Thank you very much for your help.
Cheers,
Cat
Hi Cat,
Hi Cat,
The easiest way is click "Functional Connectivity" and then "Define ROI" in DPARSF, then you will get the functional connectivity maps automatically.
If you want to use REST, you need to do it seperately for FunImgARCFWS and S2_FunImgARCFWS. You need "add all-subfolders recursively" to add all the subjects.
Best,
Chao-Gan
Re: [RFMRI] Bet error
On Dec 20, 2014, at 11:54 PM, The R-fMRI Network <rfmri.org@gmail.com> wrote:
Dear Expert,
Dear Expert,
we runned into the same error of Cat:
/usr/local/fsl/bin/bet: line 151: /bin/remove_ext: No such file or directory
...
but we think that our FSL installation is good because we usually used bet and we also tried to run bet from the terminal with a T1 image and evrything works in the correct way. Could you please let us know how we can find out what is the problem? We are running DPARSF v.3.1
Any help will be appreciated.
Thanks