running again FC

Submitted by Gea on

Hi again, 

I was trying with DPARSFA running just the FC adding masks rois but it didn't work properly.

When I performed the whole analyisis it worked perfectly, now running just FC in DPARSFA when I perform two test analysis I can see voxels outside the brain. 

Where is the mistake? 

 

Thanks in advance!!

YAN Chao-Gan

Tue, 07/22/2014 - 12:10

Permalink

Hi Juan,
What's the error message for "adding masks rois but it didn't work properly".

If you didn't give a mask, or click the "default" mask, then you can have a chance to see artifacts outside brain.

Best,

Chao-Gan


On Tue, Jul 22, 2014 at 5:07 AM, The R-fMRI Network <rfmri.org@gmail.com> wrote:
[To post a comment, please reply to rfmri.org@gmail.com ABOVE this line]

By Juan Gea (Gea)

Hi again, 

I was trying with DPARSFA running just the FC adding masks rois but it didn't work properly.

When I performed the whole analyisis it worked perfectly, now running just FC in DPARSFA when I perform two test analysis I can see voxels outside the brain. 

Where is the mistake? 

 

Thanks in advance!!


Online version of this post: http://rfmri.org/content/running-again-fc


sorry, 

I was trying to say that when I had all the data processed with DPARSFA, and if then I want to run again the FC but with masks, (just FC and some masks.) and for the time I analyse the new zFCRoi I can see some voxel outside the brain. 

Now, I tried several times, choosing different data folders. And now, looks that with FunImgARCW folder ain't got this problem anymore. 

Could be that?

Thank you again!

 

Sorry, I still didn't get your point. Could you use some figures to illustrate that?
Best,

Chao-Gan


On Tue, Jul 22, 2014 at 9:37 AM, The R-fMRI Network <rfmri.org@gmail.com> wrote:
[To post a comment, please reply to rfmri.org@gmail.com ABOVE this line]

Commented by Juan Gea (Gea)

sorry, 

I was trying to say that when I had all the data processed with DPARSFA, and if then I want to run again the FC but with masks, (just FC and some masks.) and for the time I analyse the new zFCRoi I can see some voxel outside the brain. 

Now, I tried several times, choosing different data folders. And now, looks that with FunImgARCW folder ain't got this problem anymore. 

Could be that?

Thank you again!

 


Online version of this post: http://rfmri.org/comment/3130#comment-3130


Hi,
I guess this is at the edge of the brain -- as the brain mask is bigger than your fMRI acquisition matrix.

You can ignore it, as every body understand this is noise.

Best,

Chao-Gan


On Wed, Jul 23, 2014 at 9:05 AM, The R-fMRI Network <rfmri.org@gmail.com> wrote:
[To post a comment, please reply to rfmri.org@gmail.com ABOVE this line]

Commented by Juan Gea (Gea)

Sure, 

You can see in this image. 

http://s30.postimg.org/6811652k1/DMNdorsal_b.png

thank you!


Online version of this post: http://rfmri.org/comment/3133#comment-3133


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