Rest img mismatch after AFNI normalization

Submitted by marvelancet on
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Hi everybody,

I'm currently processing a series of rest fmri data which need to be manually normalized.

The procedure briefly goes like this:

 -- dparsf completed the pre-normalization steps from 'dicom->nifti' to 'realign'
 -- toggle spm, 'coregister: estimate', 

 -- switch AFNI,
   '3dWarp -deoblique' and '3drefit -markers ' to generate sturctural .HEAD/BRIK pair