Hi, prof. Yan.
I have several questions about dpabisurf preprocessing.
I performed dpabisurf preprocessing for 10 subjects(PreAcuS001-S010).
At first, I thought it was going well, but an error occurred and dpabisurf stopped working(attached photo).
Perhaps the problem occurred during the process of fmriprep.
And It seems that an error occurred during the segmentation of one subject(S008).
I checked the error message only today after the weekend, and it seems to have failed despite re-running fmriprep several times automatically in the dpabisurf.
I am not exactly sure but, it doesn't seem to be any problem visually in the T1 raw image(nii file) of the subject.
In this situation, I have two questions.
1. In this case, How should I proceed to solve the problem? (segmentation...)
2. Except for the problemed subject, fmriprep seems to have worked well for the rest of the subjects(other 9 subjects). However, the dpabisurf pipeline stopped.
If I want to continue the rest of the preprocessing steps(without start over again from initial FunImg/T1Img) on 9 subjects that have progressed well, how should I start?
(at first, I checked after fmriprep(from organize fmriprep-Nuisance covariate regression-...- smooth derivates), but I don't know the 'Starting Directory Name'(ex. FunRaw, FunImg))
I look forward to your wise comments.
Sincerely, Thank you.
Attachment | Size |
---|---|
Situation just before the final error message | 49.67 KB |
final error message | 17.83 KB |
segmentation fault | 62.84 KB |
it seems to have failed despite re-running fmriprep several times automatically in the dpabisurf | 48.64 KB |
in the log file of subject(errors) | 7.49 KB |
I think there is something
I think there is something wrong with the raw data for this subject.