VMHC within DPARSFA pipeline

Submitted by druzgal on
I've have a question doing VHMC within the DPARSFA pipeline. The default outputs of VHMC include both VMHC and zVMHC files. The zVMHC file seems to reflect a Z-transform of the VMHC file, performed on every voxel inside a default brain mask. However, the default mask includes the midline slice that has perfect correlation with itself. Is there a way to exclude the midline slice from the Z-transform?

Thanks,

Jason
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