DPABI/DPABISurf/DPARSF

Memory Error

Submitted by bmalivoire on

Hi, I am receiving the following error trying to complete standardization: 

??? Out of memory. Type HELP MEMORY for your options.

Error in ==> var at 87
    y = sum(abs(x).^2, dim) ./ denom; % abs guarantees a real result

Error in ==> std at 32
y = sqrt(var(varargin{:}));

Error in ==> y_Standardization at 84
Std_AllSub = std(AllVolume)';

Did not know what happend

Submitted by Spiral on

Dear experts,

    Recently I just tried using the DPARSF v4.1 to preprocess my resting fmri data, but somehow always could not finish it, reminding the mistake in time point when maybe last step to normalize. Strange thing is I specially checked all the data, there is no wrong in FunRaw. So I am totally confused. Below I showed some screenshots with the template parameters I set and some details of the mistake that Matlab warned.

Best regards,

Xin

How can I extract grey matter voxel signal?

Submitted by Eunji Jun on

Hi, I have 2 questions.

First, How can I extract only grey matter voxel signal?

I extracted 116 ROI region signal applied by AAL mask, but I need voxel-wise information.

I knew that functional information comes from grey matter, so I'm gonna extract all voxel signals in grey matter.

 

Second, I don't know how I can start the point where I have done processing so that I shouldn't do again what I had done.

I tried to uncheck the menu which I have done, but I don't know how I can write 'starting working directory'.

Clusters

Submitted by Ali on

Dear Dr YAN

please i want to read about clusters,i need to know every thing about(cluter size ,peak in cluster and custer report)

and i have question if i save all cluter does the cluter report return all activated regions for all slices?

thanks for your help.

Error at the Automask Step

Submitted by bmalivoire on

Hi! I am getting the following error at the automask step and I am wondering how to proceed?

 

Reading images from "____" etc.

Fixed Clip level = 1507.574839

Used gradual clip level = 1325.819201 ... 1628.431869

Number voxel above clip level = 27351;

Clustering voxels...

??? Undefined function or method 'bwlabeln' for input arguments of type 'double'.

 

Error in ==> w_Automask>w_mask_clust at 306

[L , num]=bwlabeln(mask , RMM);

 

Error in ==> w_Automask at 58

mask = w_mask_clust(mask);