DPABI/DPABISurf/DPARSF

work directory

Submitted by lixi on

Hi DPARSFer,

We used to use DPARSF_V2.3 to process rsfMRI data three years ago. When I set path "Working Directory", no participant is listed (showing) in "Participants". I have tried to set up a folder -  "FunImg/Subject001/.img/nii or a folder - "FunRaw/Subject001/.dicom".  What did I do wrong? Any advice would be greatly appreciated.

 

Best regards,

Xingbao Li

 

关于DARTEL的疑惑

Submitted by ly666 on

尊敬的各位老师,

         在用Dpabi做数据预处理时我们常用默认推荐的DARTEL做分割,然后配准到标准空间。但在了解一些DARTEL的知识后有了一个困惑:我所理解DARTEL是根据处理组中所有人的信息生成了specific template,然后基于这些template做配准。这样的活,如果我想在加入新的被试,那么我应该是将这个被试和之前已经处理的所有被试放在一组再重新处理一遍?毕竟上次处理DARTEL生成的specific template 并没有包含这个新来的被试信息。还是说只要将这个被试一个人重新做个预处理?这两种做法会有很大差异么?比如我想做个多站点的数据处理,由于不同站点的采集参数不同,我可能会将站点分开处理,这样应该每个站点都有自己的specific template,会对配准或分割有影响么?或者将分割前分站点处理,后面分割、配准到标准空间时再将所有站点放在一起处理?

          可能我对DARTEL的理解有错误,望老师们指正。

Question about wAutomask

Submitted by ly666 on

Dear all,

                Recently, I met some problems when I  used Dpabi for fMRI data preprocessing .

                1) Usually,after normalization,  error "Function 'subsindex' is not defined for values of class 'matlab.ui.Figure'." will be reported in matlab so that we couln't obtain PicturesForChkNormalization files. Our version of matlab is 2017b in Ubuntu 16.04, how do we work out this problem? Or what's recommend version  of matlab?

TDA information

Submitted by zuolonglotu@gm… on

Dear Prof. Yan,

The TDA module was performed to calculate the concordance (the dynamic metrics was calculated before, e.g. the alff+falff, reho, DC and GSCorr ) and the error information was as follows,

Calculating Functional Connectivity by Seed based Correlation Anlyasis finished, elapsed time: 23.6406 seconds.

Warning: Directory already exists.

> In DPABI_TDA_run at 228

  In DPABI_TDA>btnRun_Callback at 931

ANOVA报错与Mask问题

Submitted by HugoY on
1. 使用Dpabi中的统计分析进行ANOVA分析比较三组的FC差异
事后比较选择Tukey检定,正常的F.nii可以正常生成,但是事后比较出现付图的报错
后来有试着运行其他事后比较,Tukey和雪费都会报错但是Dunnet和Bonferroni可以运行,请问是下列报错是哪些地方操作错误了呢?
2.教学影片中有提到如果欲使用AlphaSim或是GRF等校正,需要选取MASK档案,但是我不知道这个Mask档案应该在哪个目录下,Masks目录下的AllresampledBrainMask没有任何内容又是正常的吗?
感谢老师的答覆

 

Error using y_ExtractROISignal (line 239)

Submitted by veeus18 on
Hell0,
I have 3 groups of subjects, and I am using a ROIList.mat file for all 3 groups. It works without issues for 2 groups. For the third, it gives below error. What does it mean?-
 
------------------------------
Error using y_ExtractROISignal (line 239)
An UndefinedFunction error was thrown on the workers for 'MaskROILabel'.  This might be because the file
containing 'MaskROILabel' is not accessible on the workers.

the criterion of remaining subjects,afeter scrubbing

Submitted by HermioneLin on

Dear all,

I want to use the data preprocessed to do the later analysis such as build a martix. But some subjects has limited timeseries when I finished scrubbing,which may result in a strange result. So I want to know how many time timeseries left in a subject( for my case ,the total time series are 180,first 5 were revoved at the very beginning part) is enough for further analysis.

Sincerely,

Lin