DPARSF error

Submitted by djo155 on
Hi Guys,

Preprocessed (detrend) my data outside of your toolbox but wanted to use DPARSF to smooth and calculate ALFF, fALFF, etc.  I created the proper folders in FunRaw, put my data in the FunImgNormalized folder, and tried to run just these steps that I wanted.  I checked smooth, use with smooth, no mask, checked everything on the ALFF line, regress out CSF.  I get the following error:

------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Smooth'
Done    'Smooth'
Done

Moving Smoothed Files:gad_c029 OKMoving Smoothed Files:gad_c031 OK
Undefined function 'alff' for input arguments of type 'char'.

Error in DPARSF_run (line 1100)
        alff(
        [AutoDataProcessParameter.DataProcessDir,filesep,FunImgDir,filesep,AutoDataProcessParameter.SubjectID{i}],
        ...

Error in DPARSF>pushbuttonRun_Callback (line 976)
    [Error]=DPARSF_run(handles.Cfg);

Error in gui_mainfcn (line 96)
        feval(varargin{:});

Error in DPARSF (line 43)
    gui_mainfcn(gui_State, varargin{:});
 
Error while evaluating uicontrol Callback

Any suggestions would be appreciated.  Thank you!

Desmond
Stanford Psychiatry Dept.

YAN Chao-Gan

Fri, 09/14/2012 - 16:40

Permalink

 Hi,

Have you also install the REST toolbox?

Best,

Chao-Gan

djo155

Fri, 09/14/2012 - 19:00

Permalink

Thank you, Chao-Gan. I needed to add REST to my path. I have a new problem now that I think relates to where my data are kept. To get them to show up in the dialogue, I've been putting them in FunImgNormalized and get the following error: ------------------------------------------------------------------------ Running job #1 ------------------------------------------------------------------------ Running 'Smooth' Done 'Smooth' Done Moving Smoothed Files:gad_c029 OKMoving Smoothed Files:gad_c031 OK Computing ALFF with: "/Volumes/EtkinLab_Data/Imaging/ctr_gad_mdd_cmd_pts/resting_state/D.Oathes/Temp/FunRaw/FunImgNormalizedSmoothedDetrendedFiltered/gad_c029" Read 3D EPI functional images: "/Volumes/EtkinLab_Data/Imaging/ctr_gad_mdd_cmd_pts/resting_state/D.Oathes/Temp/FunRaw/FunImgNormalizedSmoothedDetrendedFiltered/gad_c029".Index exceeds matrix dimensions. Error in rest_to4d (line 50) rest_waitbar(0.001, ... Error in alff (line 34) [AllVolume,vsize,theImgFileList, Header,nVolumn] =rest_to4d(ADataDir); Error in DPARSF_run (line 1100) alff( [AutoDataProcessParameter.DataProcessDir,filesep,FunImgDir,filesep,AutoDataProcessParameter.SubjectID{i}], ... Error in DPARSF>pushbuttonRun_Callback (line 976) [Error]=DPARSF_run(handles.Cfg); Error in gui_mainfcn (line 96) feval(varargin{:}); Error in DPARSF (line 43) gui_mainfcn(gui_State, varargin{:}); Error while evaluating uicontrol Callback =================================== Is there a different folder I should put the images into if I want to calculate ALFF, fALFF, etc. in native space? Thanks much, Desmond

Hi Desmond, The basic edition need you to put the data under FunImgNormalizedSmoothedDetrendedFiltered other than FunImgNormalized. I suggest you use DPARSF advanced edition by type in DPARSFA. It's much more flexible and you can use any Starting Directory name. Best, Chao-Gan
Forums
Discuss