One more question, does the part "Reorienting T1 Image Interactively for XXX" require any input from the user? The Matlab display has been displaying the above message for more than an hour now. Please advise.
Thanks.
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a network for supporting resting-state fMRI related studies.
Re
Yes, Interactively means DPARSF is waiting for your inputs.
"3. Reorient functional images and reorient T1 images interactively before coregistration: Checkbox "Reorient Fun*" and Checkbox "Reorient T1*". Interactively reorienting the anatomic images and functional images so that the origin approximated the anterior commissure and the orientation approximated MNI space, this will improve the accuracy in coregistration and segmentation. This step could probably solve the bad normalization problem for some subjects in "normalized by unified segmentation" or "normalized by DARTEL"."
Please refer to http://rfmri.org/course Part III for interactively reorienting.