Hi teams,
when using dpabisurf to process data, an error happened due to lack of disk pace. I copyed the processed data to my external disk, and want to use this to process the remaining steps. Is it OK to do so? Could you please help me check where should I start? I don't want to re-processing all over agin, it spends too much time. Thanks very much.
------------------error info-----------------------
$Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $
setenv SUBJECTS_DIR /data/freesurfer
cd /tmp
mri_surf2surf --s fsaverage5 --hemi rh --sval /data/Results/FunSurfRH/fALFF_FunSurfWC/fALFF_sub-Sub004.func.gii --fwhm 6 --cortex --tval /data/ResultsS/FunSurfRH/fALFF_FunSurfWC/sfALFF_sub-Sub004.func.gii
sysname Linux
hostname 5815eecccdfc
machine x86_64
user root
srcsubject = fsaverage5
srcval = /data/Results/FunSurfRH/fALFF_FunSurfWC/fALFF_sub-Sub004.func.gii
srctype =
trgsubject = fsaverage5
trgval = /data/ResultsS/FunSurfRH/fALFF_FunSurfWC/sfALFF_sub-Sub004.func.gii
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = rh
trghemi = rh
frame = 0
fwhm-in = 0
fwhm-out = 6
label-src = rh.cortex.label
label-trg = rh.cortex.label
OKToRevFaceOrder = 1
UseDualHemi = 0
Reading source surface reg /data/freesurfer/fsaverage5/surf/rh.sphere.reg
Loading source data
Reading source subject label mask rh.cortex.label
masking the input
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 6.000000,
std = 2.547965, with 2 iterations of nearest-neighbor smoothing
Reading target space mask label rh.cortex.label
NN smoothing output with n = 2
Saving target data
Saving to /data/ResultsS/FunSurfRH/fALFF_FunSurfWC/sfALFF_sub-Sub004.func.gii
$Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $
setenv SUBJECTS_DIR /data/freesurfer
cd /tmp
mri_surf2surf --s fsaverage5 --hemi rh --sval /data/Results/FunSurfRH/fALFF_FunSurfWC/zfALFF_sub-Sub004.func.gii --fwhm 6 --cortex --tval /data/ResultsS/FunSurfRH/fALFF_FunSurfWC/szfALFF_sub-Sub004.func.gii
sysname Linux
hostname 5815eecccdfc
machine x86_64
user root
srcsubject = fsaverage5
srcval = /data/Results/FunSurfRH/fALFF_FunSurfWC/zfALFF_sub-Sub004.func.gii
srctype =
trgsubject = fsaverage5
trgval = /data/ResultsS/FunSurfRH/fALFF_FunSurfWC/szfALFF_sub-Sub004.func.gii
trgtype =
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
srchemi = rh
trghemi = rh
frame = 0
fwhm-in = 0
fwhm-out = 6
label-src = rh.cortex.label
label-trg = rh.cortex.label
OKToRevFaceOrder = 1
UseDualHemi = 0
Reading source surface reg /data/freesurfer/fsaverage5/surf/rh.sphere.reg
Loading source data
Reading source subject label mask rh.cortex.label
masking the input
INFO: trgsubject = srcsubject
Approximating gaussian smoothing of target with fwhm = 6.000000,
std = 2.547965, with 2 iterations of nearest-neighbor smoothing
Reading target space mask label rh.cortex.label
NN smoothing output with n = 2
Saving target data
Saving to /data/ResultsS/FunSurfRH/fALFF_FunSurfWC/szfALFF_sub-Sub004.func.gii
------------------------------------------------------------------------
16-Jun-2020 08:30:25 - Running job #1
------------------------------------------------------------------------
16-Jun-2020 08:30:25 - Running 'Smooth'
16-Jun-2020 08:30:26 - Done 'Smooth'
16-Jun-2020 08:30:26 - Done
------------------------------------------------------------------------
16-Jun-2020 08:30:26 - Running job #1
------------------------------------------------------------------------
16-Jun-2020 08:30:26 - Running 'Smooth'
16-Jun-2020 08:30:26 - Done 'Smooth'
16-Jun-2020 08:30:26 - Done
------------------------------------------------------------------------
16-Jun-2020 08:30:28 - Running job #1
------------------------------------------------------------------------
16-Jun-2020 08:30:28 - Running 'Smooth'
16-Jun-2020 08:32:25 - Failed 'Smooth'
Error using mat2file
Problem writing last piece of data (could be a disk space or quota issue).
In file "/home/test/Matlab_toolbox/spm12/@file_array/subsasgn.m" (v7147), function "subfun" at line 164.
In file "/home/test/Matlab_toolbox/spm12/@file_array/subsasgn.m" (v7147), function "subsasgn" at line 85.
In file "/home/test/Matlab_toolbox/spm12/spm_write_plane.m" (v6079), function "spm_write_plane" at line 31.
In file "/home/test/Matlab_toolbox/spm12/spm_smooth.m" (v4419), function "smooth1" at line 107.
In file "/home/test/Matlab_toolbox/spm12/spm_smooth.m" (v4419), function "spm_smooth" at line 37.
In file "/home/test/Matlab_toolbox/spm12/config/spm_run_smooth.m" (v3915), function "spm_run_smooth" at line 20.
The following modules did not run:
Failed: Smooth
Error using MATLABbatch system
Job execution failed. The full log of this run can be found in MATLAB command window, starting with the lines
(look for the line showing the exact #job as displayed in this error message)
------------------
Running job #1
------------------
Error while evaluating UIControl Callback.
IdleTimeout has been reached.
Parallel pool using the 'local' profile is shutting down.
------------------------------------------------------------------
Best wishes,
Thee
Forums
I think you can re-restart
I think you can re-restart with FunSurfWC.