Dear Dr. Yan
When I used the DpabiSurf to pre-processe the DemoData posted in this website, I noted that the parallel computation in matlab was not work during the stages of “Convert to BIDS” and “Preprocessing with fmriprep”, in other word, 3 subjects was preprocessed one by one in order, which is very time comsuming. But in the latter stages such as “slice order”, the parallel computation was work. Although that, “Preprocessing with fmriprep” is the most time comsuming stage and we may more need to do parallel computation in this stage.
I noted that when I installed and setted the DpabiSurf and Docker, I can not to Set User/Memory since this setting is not avaiable in the new version of Docker. Does it have anything to do with this.
Some information of my computing platform:
Operation system: Windows Pro 10Matlab 2018bDpabiSurf 1.6Docker 3.33number of core: 12RAM: 64GThanks for any help given.
Best,
Zeqiang
Hi Zeqiang,
Hi Zeqiang,
When running fmriprep, MATLAB parallel workers would be closed.
However, it's still running in parallel with fmriprep with the number of workers you defined. Using linux's parallel other than matlab's.