Re:[RFMRI] Q: Functional Connectivity ROIs

I recommend you may make soft (Restplus or SEECAT)to tackle and analysis

------------------ 原始邮件 ------------------
发件人: "The R-fMRI Network" ;
发送时间: 2016年11月4日(星期五) 2:44
收件人: "" ;
主题: [RFMRI] Q: Functional Connectivity ROIs

[To post a c

a problem


I am very glad to receive your reply.

A problem has been encountered by me. I want to study R-fMRI Course , but logon always failed. Please tell me how to watch this video.I am looking forward to receiving your reply.


R-fMRI nodes.

Normalization Rat with T1 template


I was able to normalize my RAT resting data using EPI but I was not t able to normalize using T1 template, it does not seems folder name problem, here is the error

Error using DPARSFA_run>(parfor body) (line 2805)
Index exceeds matrix dimensions.

Error in DPARSFA_run (line 2707)
parfor i=1:AutoDataProcessParameter.SubjectNum

Error in DPARSFA>pushbuttonRun_Callback (line 1782)

Error in gui_mainfcn (line 95)



I finished all the preprocessing step for RAT resting state without any error message.

when Im checking Quality control of my data :

Im overlaying functional images on their structural image after co registration and normalization....its seems perfectly overlap

But when Im overlapping my functional and structural images with template that is provided in the template folder thee are not perfectly overlap.

do you know what might be the error ? just to let you know that i have resize my voxel by factor of 10 at the beginning

Warning message


Im running realignment step in rat , I have skipped the slice timing, the realignment step finished properly, but i got this warning message , should I worry about that ?

Warning: Run spm_jobman('initcfg'); beforehand
In spm_jobman at 107
In DPARSFA_run>(parfor body) at 795
In parallel_function>make_general_channel/channel_general at 927
In remoteParallelFunction at 38


is Dpabi compatible with Matlab2016 ?


Resampling Masks after preprocessing

Dear Dr. / Yan:

     I am using DPABI to process resting state data of mice. I used it for the preprocessing and it worked perfectly after changing the rat templateinto a mouse template. Now I am trying to calculate the ReHo, ALFF, fALFF, FC, ... maps, but the program always write ..(resampling masks of WM, GM and CSF). I checked theses masks in the template folder and appparently they belong to humans not rats. I used my own mask, but it still displays the same lines.



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